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Papers with Code

by @stephenturner.us

Papers with Code! Looks for posts with links to GitHub and one of: pubmed, biorxiv, arxiv, medrxiv, oup (bioinformatics), nature, biomedcentral, science, genomebiology, cshlp (genome research), wiley, elsevier, pnas, plos. Created by @stephenturner.us (https://blog.stephenturner.us/)

991posts tracked
378accounts appearing
2median-ish likes / post
135best post
1d agolast new post

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Too many neuro preprints to keep track of, so I made a monthly ranking of the most-read ones on bioRxiv. Not a measure of quality, just what people are reading. Here's the fresh ranking for September: robertodf.github.io/biorxiv-top/

@roberto-defilippo.bsky.social β™₯ 135 ⇄ 21 πŸ’¬ 4

The first manuscript from my postdoc is out (doi.org/10.64898/202...)! We introduce 𝐭𝐒𝐦𝐞-𝐬𝐭𝐫𝐚𝐭𝐒𝐟𝐒𝐞𝐝 𝐬𝐭𝐚𝐭𝐒𝐬𝐭𝐒𝐜𝐬 for studying population structure change over time, with the temporal resolution of Ancestral Recombination Graphs (ARGs). Joint…

@yundeng.bsky.social β™₯ 91 ⇄ 52 πŸ’¬ 1

Happy to share a new working paper: "Machine Learning Models Trained on a Longitudinal Survey Dataset Poorly Predict Hundreds of Life Outcomes" arxiv.org/abs/2610.17115 You can hear Emily Cantrell present it Thursday Oct 15 at Oxford: metr…

@msalganik.bsky.social β™₯ 73 ⇄ 30 πŸ’¬ 0

Apple has published a paper & model based on Qwen 3.5 9B for processing large amounts of multi document text, compressed as images, LensVLM 9B: huggingface.co/bartowski/Le... github.com/apple-aiml-r... arxiv.org/abs/2605.07019

@sgray.bsky.social β™₯ 41 ⇄ 3 πŸ’¬ 1

Happy to share our new preprint on MEM-CALVADOS! Work led by @rsaltutti.bsky.social extending CALVADOS to flexible proteins at lipid membrane interfaces. πŸ—žοΈ doi.org/10.64898/202... πŸ–₯️ github.com/gitesei/MEM-... @vetenskapsradet.bsky.soci…

@giuliotesei.bsky.social β™₯ 37 ⇄ 10 πŸ’¬ 0

New paper with Trang Nguyen! Do you have only a single parent and offspring, but still want to calculate mutation rates? We've got the tool for you--OOPS github.com/TrangNg-Th/O... www.biorxiv.org/content/10.6...

@3rdreviewer.bsky.social β™₯ 37 ⇄ 16 πŸ’¬ 0

πŸ“Pinned Post: Welcome to the papers with code feed! bsky.app/profile/did:... Papers from PubMed, bioRxiv, Bature, PLoS, etc, with links to GitHub will be included here. Anyone can post to this feed. See also: blog.stephenturner.us

@stephenturner.us β™₯ 32 ⇄ 8 πŸ’¬ 2

Proud to present the publication of napari-lattice – our solution to the immense computational requirements of Lattice Light Sheet and Oblique Plane Microscopy. onlinelibrary.wiley.com/doi/10.1111/... Before I get into the thread, the i…

@drlachie.bsky.social β™₯ 32 ⇄ 13 πŸ’¬ 1

Introducing Multi-Agent Self-Supervision (MASS): Recursive self-improvement through collective intelligence 🧡 Blog: pub.sakana.ai/mass/ Paper: arxiv.org/abs/2610.12176 Code: github.com/SakanaAI/mass

@sakanaai.bsky.social β™₯ 32 ⇄ 8 πŸ’¬ 1

with tom-dages.bsky.social @dcremers.bsky.social @xiwang1212.bsky.social @phillipisola.bsky.social Paper: arxiv.org/abs/2610.09411 Code: github.com/dominik-schnaus/unpaired-rosetta Project page: dominik-schnaus.github.io/unpaired-rosetta

@schnaus.bsky.social β™₯ 30 ⇄ 2 πŸ’¬ 4

I love this so much! "A language model that only knows what a 5th grader knows." (arxiv.org/abs/2608.13545) littlelearner-ll.github.io

@kerry.bsky.social β™₯ 29 ⇄ 2 πŸ’¬ 0

@gbouras13.bsky.social talking about his new protein structure-based bacterial genome annotation tool, Baktfold. 🧫🧬 GitHub: github.com/gbouras13/ba... Preprint: www.biorxiv.org/content/10.6... #ISME20

@vijinim.bsky.social β™₯ 27 ⇄ 6 πŸ’¬ 1

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